How does a new antimicrobial kill the fungi that invade immunosuppressed patients?
Professor Tim Levine, Institute of Ophthalmology, University College London
Dr Mike Birch , F2G Ltd
Fungal infections may appear as an everyday nuisance to most of us, but for an unlucky minority, (~1 in 5,000 in the UK and world-wide) fungi are a lethal threat (high mortality - over 25%). Worse still, this is growing because immunosuppression is increasingly common and currently available antifungals are overused causing resistance. This project will study the first new class of system antifungal that have reached Phase 2 clinical trial for 15 years. We will discover how they are so effective against the class of Aspergilli, and study if related compounds would be effective in the other major pathogenic fungi: Candida. This will inform the development of related compounds for wider and more effective therapies in the future.
Hard-to-treat fungal infections are a growing problem both UK and worldwide (rates respectively 10,000 and 2M/year; mortality 40% and 25%). Rates are rising because of increased immunosuppression caused by uncontrolled diabetes and cancer therapy (UK), and AIDS (worldwide). Fungal epidemiology is also changing with multidrug resistant species such as Candida auris emerging within the last few years. Other rarer fungi such as Lomentospora spp. have no treatment options, being resistant to all current agents.
Olorofim is a first-in-class anti-fungal developed by the industrial partner F2G Ltd (Eccles, Manchester . Discovery of an antimicrobial with a completely new mode of action is rare. Echinocandins were developed over 20 years ago as the first class of antifungals active against cell walls. The orotomide class represents the only new class of antifungal in Phase 2 clinical trial for 15 years. The value of antifungals worldwide is ~$15B/yr. Anti-cell wall therapy by echinocandins are a successful recent addition (>20 years ago) but imperfect due to fungistatic action, and some fungal species show innate resistance. Fungi also attack crops (>$200B loss / year), so new antifungals are needed to maximise food security. Our work will underpin future development of Olorofim-related compounds to protect plants. Developing understanding of Olorofim, determining its synergy with other antifungals and predicting how drug resistance might develop will maximise its societal benefits. The project will create translational opportunities for inhibitors of other fungal DHODH enzymes, including Mucor and many Candida species.
The project will look into the pathways by which Olorofim kills fungi, a key aspect of its therapeutics , which likely contributes to it being highly effective in immunosuppressed invasive fungal models . Olorofim targets the enzyme dihydroorotic acid dehydrogenase (DHODH), an essential ubiquitous enzyme in pyrimidine synthesis, strongly selecting for the Aspergillus isozyme compared to the human (2000:1). In model budding yeast, pyrimidine starvation is lethal more rapidly (t½ 16 hours) than starvation for any other metabolite tested (e.g. phosphate t½ 25 days) because there is no pyrimidine starvation programme . This leaves many possible targets to consider in its killing of cells, as pyrimidines are required for the synthesis of all classes of large biomolecule: DNA, RNA, sugar modifications for proteins, and phospholipids. To some extent the study will therefore also expand our knowledge of the understanding of how the key pathways affected by Olorofim signal to each other.
The cell lysis seen with medium term exposure to Olorofim has features that indicate cell wall damage, which fits with an effect via sugar modifications of cell wall proteins. However, another major class of antifungals that target the cell wall, the echinocandins, is only fungistatic. Therefore, this project will focus on what combination of effects gives Olorofim the ability to kill fungi. At UCL we will work with non-pathogenic strains that represent the best models for virulent strains. At F2G, the student will learn techniques in filamentous fungal molecular biology, antifungal screening, fungal biochemistry and chemistry developing target proteins for drug discovery, as well as being immersed in the operations of a small biotechnology company.
- 1. Validate S cerevisiae as a model system
- 2. Determine how cell wall targeting interacts with other pyrimidine pathways
- 3. Determine how pyrimidine starvation kills fungi with pathogenic potential including both Aspergilli (A. nidulans) and Candida (C. albicans).
- 4. Confirm these pathways apply in pathogenic filamentous fungi (at F2G)
- Oliver, et al, Proc Natl Acad Sci U S A, 2016. 113: 12809-12814. 10.1073/pnas.1608304113
- du Pre, et al, Antimicrob Agents Chemother, 2018. 62. 10.1128/AAC.00231-18
- Seyedmousavi, et al, Antimicrob Agents Chemother, 2019. 63. e00129-19. 10.1128/AAC.00129-19.
- Boer, et al, Proc Natl Acad Sci U S A, 2008. 105: 6930-5. 10.1073/pnas.0802601105
eligibility and application
Applicants must hold, or be expected to achieve, a first or high upper second-class undergraduate honours degree or equivalent (for example BA, BSc, MSci) or a Masters degree in a relevant subject. This project is funded by a 4-year BBSRC studentship, applicants should ensure they have understood the funding eligibility criteria for these studentships. Unfortunately international students are not eligible for programme funding on this project.
The ideal candidate will have a dynamic approach and relevant interests. A background in any of the biological sciences and some previous experience with related laboratory work are desirable but not required.
For more information regarding the project, please contact Professor Tim Levine
Download the APPLICATION GUIDELINES here.